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scipy: fork 1.12.0 for bug fix
This commit is contained in:
Rick Farina (Zero_Chaos)
parent
33c650830e
commit
66e1e73917
2 changed files with 154 additions and 0 deletions
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DIST scipy-1.11.4.tar.gz 56336202 BLAKE2B a2091a1edb54eb73c2de6ed8c62a7e571f37b247c9af50947aa97b739342c96b87b20a82b1a238c859fa532c84249cbadde228366dcea3555e9a506c1ae55031 SHA512 2eb403f6de9723b411d948b8e1b5457078704c605b8e760d42362c82d802e167eaaf701ddb8b480af2bdf2efe4dbf66fcc4e97321519bb8dab19b0e2a8976beb
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DIST scipy-1.12.0.tar.gz 56811768 BLAKE2B 03c142274f1466747935fa54fab427f3a48c1642406211fa1a0f8ad5e0f194baecf76182e0448a0fb647063871483239cd876ce431cd9406e396e6170912ab64 SHA512 376ed94c4caaf782814bb07047fff0b363f7b608a0399697c6e862432333cbe6d3abb351730a574a3f077b3cdd9cb7474090a460baffcfbd5546bcfee309b6e7
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DIST scipy-html-1.11.2.zip 50435722 BLAKE2B 460c67509a8bf50986f866ee2f90e634af21ddd71508efeef5681c2ee2130c3f79b4b428bc21277bfb310bb45ccad1fb38221ada43620055377cdc4839b9d1e5 SHA512 986a6e37f9e01dc4925ef22af6ff660bae1e4b66e57270262974c207dfb70285e3f8f548774d6e81d5f457b9198c0ba1c06e6d689fe5d54fdea878c1e5a7f797
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153
dev-python/scipy/scipy-1.12.0.ebuild
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153
dev-python/scipy/scipy-1.12.0.ebuild
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# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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FORTRAN_NEEDED=fortran
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DISTUTILS_EXT=1
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DISTUTILS_USE_PEP517=meson-python
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PYTHON_COMPAT=( pypy3 python3_{10..12} )
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PYTHON_REQ_USE="threads(+)"
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inherit flag-o-matic fortran-2 distutils-r1
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DESCRIPTION="Scientific algorithms library for Python"
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HOMEPAGE="
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https://scipy.org/
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https://github.com/scipy/scipy/
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https://pypi.org/project/scipy/
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"
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if [[ ${PV} == *9999* ]] ; then
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inherit git-r3
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# Need submodules, so git for now.
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EGIT_REPO_URI="https://github.com/scipy/scipy"
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EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
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EGIT_SUBMODULES=( '*' )
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else
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inherit pypi
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# Upstream is often behind with doc updates
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#DOC_PV=${PV}
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DOC_PV=1.11.2
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SRC_URI+="
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doc? (
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https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
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)"
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if [[ ${PV} != *rc* ]] ; then
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KEYWORDS="amd64 arm arm64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc x86"
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fi
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fi
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LICENSE="BSD LGPL-2"
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SLOT="0"
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IUSE="doc +fortran test-rust"
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# umfpack is technically optional but it's preferred to have it available.
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# forked for https://bugs.gentoo.org/922782
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DEPEND="
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dev-cpp/xsimd
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>=dev-python/numpy-1.21.6[lapack,${PYTHON_USEDEP}]
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sci-libs/arpack:=
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sci-libs/umfpack
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virtual/cblas
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>=virtual/lapack-3.8
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"
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RDEPEND="
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${DEPEND}
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dev-python/pillow[${PYTHON_USEDEP}]
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"
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BDEPEND="
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dev-lang/swig
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>=dev-python/cython-0.29.35[${PYTHON_USEDEP}]
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>=dev-python/meson-python-0.12.1[${PYTHON_USEDEP}]
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>=dev-python/pybind11-2.10.4[${PYTHON_USEDEP}]
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>=dev-build/meson-1.1.0
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!kernel_Darwin? ( dev-util/patchelf )
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virtual/pkgconfig
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doc? ( app-arch/unzip )
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fortran? ( dev-python/pythran[${PYTHON_USEDEP}] )
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test? (
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dev-python/hypothesis[${PYTHON_USEDEP}]
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)
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test-rust? (
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dev-python/pooch[${PYTHON_USEDEP}]
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)
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"
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EPYTEST_XDIST=1
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distutils_enable_tests pytest
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src_unpack() {
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default
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if use doc; then
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unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
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fi
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}
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python_configure_all() {
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# https://github.com/scipy/scipy/pull/19857
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# Fixed in 1.13.0
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filter-lto
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DISTUTILS_ARGS=(
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-Dblas=blas
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-Dlapack=lapack
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-Duse-pythran=$(usex fortran true false)
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)
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}
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python_test() {
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cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
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local EPYTEST_DESELECT=(
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# Network
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scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
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scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
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scipy/datasets/tests/test_data.py::TestDatasets::test_face
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scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
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# Precision issue with diff. blas?
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scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
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# Crashes with assertion, not a regression
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# https://github.com/scipy/scipy/issues/19321
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scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
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# timeouts
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scipy/sparse/linalg/tests/test_propack.py::test_examples
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# hang or incredibly slow
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scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
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scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
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)
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local EPYTEST_IGNORE=()
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if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
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EPYTEST_IGNORE+=(
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scipy/datasets/tests/test_data.py
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)
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fi
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case ${EPYTHON} in
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pypy3)
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EPYTEST_DESELECT+=(
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# fd leaks in tests
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# https://github.com/scipy/scipy/issues/19553
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scipy/fft/_pocketfft/tests/test_real_transforms.py
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# TODO
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'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
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)
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;;
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esac
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epytest scipy
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}
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python_install_all() {
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use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
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distutils-r1_python_install_all
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}
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